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Clarence Chan
Chan

Adjunct Associate Professor

Ph.D. Cornell University, 1985

clarence_chan@mail.utexas.edu

Office ESB 519A
(512) 471-6860

 

   

The research in our laboratory is centered on two cellular processes that are of fundamental importance in the eukaryotic cell cycle - chromosome segregation (or mitosis) and cellular morphogenesis (or spatial control of cell growth and division).  To ensure the proliferation of progeny cells that have identical genetic contents, these two processes must be properly controlled and tightly coordinated.  Errors in these processes are common causes of many forms of human disease.  The organism that we have chosen to use for our studies is the budding yeast Saccharomyces cerevisiae, which is amenable to the sophisticated genetic, genomic, biochemical, cytological and molecular methodologies that we use.

Chromosome Segregation
During chromosome segregation, the kinetochore of each chromosome must attach to microtubules.  Furthermore, each of the two kinetochores of a chromosome pair (sister chromatids) must attach to microtubules that emanate from a single pole of the mitotic spindle and the two sister kinetochores must attach to microtubules from opposite poles.  This pattern of bipolar attachment allows the sister chromatids to separate and move subsequently towards opposite poles.  How kinetochore-microtubule attachment is regulated is very poorly understood.  Through the study of mutant yeast cells that fail to segregate chromosomes properly (see figure), we have identified the Ipl1/Sli15/Bir1 protein kinase complex as a central regulator of kinetochore-microtubule attachment.  Sister kinetochores of yeast cells that are defective in this complex often attach to microtubules from the same pole.  The genes encoding human homologs of proteins in this complex (Aurora/INCENP/Survivin) are deregulated in diverse forms of human cancer.
To understand how the Ipl1 kinase complex regulates kinetochore-microtubule attachment, we have identified and studied a number of physiological substrates of this complex.  These substrates include kinetochore proteins (e.g., the Dam1 complex) and proteins that affect microtubule function. Amazingly, many of these yeast proteins also have human counterparts that are deregulated in diverse forms of human cancer.  Thus, it is clear that our studies not only help us understand chromosome segregation in yeast (and humans) but also may help us understand the connection between chromosome missegregation and human tumorigenesis.  Our current studies are focused on understanding at the molecular level how the phosphorylation of specific proteins by the Ipl1 kinase complex affects the chromosome segregation process.

Cellular Morphogenesis
In most eukaryotic cells, polarized cell growth requires the proper localization (to specific sites on the plasma membrane) of the evolutionarily conserved Cdc42 GTP-binding protein.  This protein functions as a molecular switch (through the conversion between the GTP- and GDP-bound forms) in signal transduction pathways that regulate the polarized organization of the actin cytoskeleton and thus the spatial pattern and site of cell growth.  Through the study of mutant yeast cells that are defective in cellular morphogenesis, we have identified and characterized several proteins that regulate the conversion between GTP- and GDP-bound forms of Cdc42.
To understand how Cdc42 organizes the actin cytoskeleton, we have identified the structurally related Gic1 and Gic2 proteins as effector proteins that associate with GTP-bound Cdc42 at sites of active cell growth (see figure).  At these sites, Gic1 and Gic2 associate with additional proteins, many of which are known to be involved in polarized cell growth and division.  We are currently studying at the molecular level how Gic1/Gic2 and other proteins function with Cdc42 to regulate the actin cytoskeleton and thus polarized cell growth


Selected Publications

Kenneth R. Henry, Kathleen D'Hondt, Ji Suk Chang, David A. Nix, M. Jamie T.V. Cope, Clarence S.M. Chan, David G. Drubin, and Sandra K. Lemmon (2003) The Actin-Regulating Kinase Prk1p Negatively Regulates Scd5p, a Suppressor of Clathrin Deficiency, in Actin Organization and Endocytosis. Current Biology 13: 1564-1569

Mehta S, Yang XM, Chan CS, Dobson MJ, Jayaram M, Velmurugan S. (2002) The 2 micron plasmid purloins the yeast cohesin complex: a mechanism for coupling plasmid partitioning and chromosome segregation? The Journal of Cell Biology 158: 625-37

Phospho-Regulation of Kinetochore-Microtubule Attachments by the Aurora Kinase Ipl1p
Iain M. Cheeseman, Scott Anderson, Miri Jwa, Erin M. Green, Jung-seog Kang, John R. Yates III, Clarence S.M. Chan, David G. Drubin, and Georjana Barnes
Cell 111(2002): 163-172 

Kang J, Cheeseman IM, Kallstrom G, Velmurugan S, Barnes G, Chan CS.(2001) Functional cooperation of Dam1, Ipl1, and the inner centromere protein (INCENP)-related protein Sli15 during chromosome segregation. The Journal of Cell Biology 155: 763-74

Drees BL, Sundin B, Brazeau E, Caviston JP, Chen GC, Guo W, Kozminski KG, Lau MW, Moskow JJ, Tong A, Schenkman LR, McKenzie A 3rd, Brennwald P, Longtine M, Bi E, Chan C, Novick P, Boone C, Pringle JR, Davis TN, Fields S, Drubin DG (2001) A protein interaction map for cell polarity development. The Journal of Cell Biology 154(3):549-71 

Bi E, Chiavetta JB, Chen H, Chen GC, Chan CS, Pringle J (2000) Identification of novel, evolutionarily conserved Cdc42p-interacting proteins and of redundant pathways linking Cdc24p and Cdc42p to actin polarization in yeast. Molecular Biology of the Cell 11: 773-793

Kim, J.-H., J.-S. Kang, and C.S.M. Chan (1999) Sli15 associates with the Ipl1 protein kinase to promote proper chromosome segregation in Saccharomyces cerevisiae. The Journal of Cell Biology 145: 1381-1394

 
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